Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5316 |
| Number of amino acids: | 484 |
| Molecular Weight: | 54568.66 Da |
| Theoretical pI: | 5.4 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 30 | 6.2% |
| Cysteine CYS (C) | 8 | 1.65% |
| Glutamic Acid GLU (E) | 37 | 7.64% |
| Aspartic Acid ASP (D) | 18 | 3.72% |
| Glycine GLY (G) | 39 | 8.06% |
| Phynylalanine PHE (F) | 30 | 6.2% |
| Isoleucine ILE (I) | 21 | 4.34% |
| Histidine HIS (H) | 12 | 2.48% |
| Lysine LYS (K) | 12 | 2.48% |
| Methionine MET (M) | 7 | 1.45% |
| Leucine LEU (L) | 35 | 7.23% |
| Asparagine ASN (N) | 37 | 7.64% |
| Glutamine GLN (Q) | 44 | 9.09% |
| Proline PRO (P) | 23 | 4.75% |
| Serine SER (S) | 34 | 7.02% |
| Arginine ARG (R) | 29 | 5.99% |
| Threonine THR (T) | 16 | 3.31% |
| Tryptophan TRP (W) | 4 | 0.83% |
| Valine VAL (V) | 33 | 6.82% |
| Tyrosine TYR (Y) | 15 | 3.1% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2401 |
| Hydrogen | H | 3672 |
| Nitrogen | N | 692 |
| Oxygen | O | 741 |
| Sulphur | S | 15 |
| Formula | C2401H3672N692O741S15 |
| Total Number of Atoms: | 7521 |
| Total number of positively charged residues (ARG + LYS): | 41 |
| Total number of negatively charged residues (ASP + GLU): | 55 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 44850 Absorption 0.1% (=1 g/l) 0.822, assuming all pairs of CYS residues form cystines Ext. coefficient 44350 Absorption 0.1% (=1 g/l) 0.813, assuming all CYS residues are reduced |
| Aromaticity: | 0.101 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 53.89 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.51, 27.48, 22.52] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 71.095 |
| Grand average of hydropathicity (GRAVY): | -0.55 |