Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5313 |
| Number of amino acids: | 439 |
| Molecular Weight: | 50552 Da |
| Theoretical pI: | 5.89 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 23 | 5.24% |
| Cysteine CYS (C) | 1 | 0.23% |
| Glutamic Acid GLU (E) | 37 | 8.43% |
| Aspartic Acid ASP (D) | 21 | 4.78% |
| Glycine GLY (G) | 19 | 4.33% |
| Phynylalanine PHE (F) | 30 | 6.83% |
| Isoleucine ILE (I) | 26 | 5.92% |
| Histidine HIS (H) | 8 | 1.82% |
| Lysine LYS (K) | 21 | 4.78% |
| Methionine MET (M) | 2 | 0.46% |
| Leucine LEU (L) | 47 | 10.71% |
| Asparagine ASN (N) | 33 | 7.52% |
| Glutamine GLN (Q) | 33 | 7.52% |
| Proline PRO (P) | 22 | 5.01% |
| Serine SER (S) | 33 | 7.52% |
| Arginine ARG (R) | 31 | 7.06% |
| Threonine THR (T) | 11 | 2.51% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 29 | 6.61% |
| Tyrosine TYR (Y) | 12 | 2.73% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2260 |
| Hydrogen | H | 3541 |
| Nitrogen | N | 635 |
| Oxygen | O | 678 |
| Sulphur | S | 3 |
| Formula | C2260H3541N635O678S3 |
| Total Number of Atoms: | 7117 |
| Total number of positively charged residues (ARG + LYS): | 52 |
| Total number of negatively charged residues (ASP + GLU): | 58 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 17880 Absorption 0.1% (=1 g/l) 0.354, assuming all pairs of CYS residues form cystines Ext. coefficient 17880 Absorption 0.1% (=1 g/l) 0.354, assuming all CYS residues are reduced |
| Aromaticity: | 0.096 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 50.76 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.80, 24.37, 24.83] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 89.2485 |
| Grand average of hydropathicity (GRAVY): | -0.51 |