Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5309 |
| Number of amino acids: | 337 |
| Molecular Weight: | 37203.81 Da |
| Theoretical pI: | 6.43 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 24 | 7.12% |
| Cysteine CYS (C) | 10 | 2.97% |
| Glutamic Acid GLU (E) | 22 | 6.53% |
| Aspartic Acid ASP (D) | 19 | 5.64% |
| Glycine GLY (G) | 22 | 6.53% |
| Phynylalanine PHE (F) | 19 | 5.64% |
| Isoleucine ILE (I) | 15 | 4.45% |
| Histidine HIS (H) | 3 | 0.89% |
| Lysine LYS (K) | 15 | 4.45% |
| Methionine MET (M) | 6 | 1.78% |
| Leucine LEU (L) | 35 | 10.39% |
| Asparagine ASN (N) | 23 | 6.82% |
| Glutamine GLN (Q) | 9 | 2.67% |
| Proline PRO (P) | 12 | 3.56% |
| Serine SER (S) | 41 | 12.17% |
| Arginine ARG (R) | 25 | 7.42% |
| Threonine THR (T) | 17 | 5.04% |
| Tryptophan TRP (W) | 1 | 0.3% |
| Valine VAL (V) | 13 | 3.86% |
| Tyrosine TYR (Y) | 6 | 1.78% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1609 |
| Hydrogen | H | 2562 |
| Nitrogen | N | 466 |
| Oxygen | O | 516 |
| Sulphur | S | 16 |
| Formula | C1609H2562N466O516S16 |
| Total Number of Atoms: | 5169 |
| Total number of positively charged residues (ARG + LYS): | 40 |
| Total number of negatively charged residues (ASP + GLU): | 41 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 15065 Absorption 0.1% (=1 g/l) 0.405, assuming all pairs of CYS residues form cystines Ext. coefficient 14440 Absorption 0.1% (=1 g/l) 0.388, assuming all CYS residues are reduced |
| Aromaticity: | 0.077 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 50.87 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.41, 29.08, 25.82] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 76.1723 |
| Grand average of hydropathicity (GRAVY): | -0.39 |