Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5298 |
| Number of amino acids: | 340 |
| Molecular Weight: | 37312.38 Da |
| Theoretical pI: | 7.14 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 24 | 7.06% |
| Cysteine CYS (C) | 8 | 2.35% |
| Glutamic Acid GLU (E) | 11 | 3.24% |
| Aspartic Acid ASP (D) | 24 | 7.06% |
| Glycine GLY (G) | 24 | 7.06% |
| Phynylalanine PHE (F) | 13 | 3.82% |
| Isoleucine ILE (I) | 12 | 3.53% |
| Histidine HIS (H) | 5 | 1.47% |
| Lysine LYS (K) | 16 | 4.71% |
| Methionine MET (M) | 8 | 2.35% |
| Leucine LEU (L) | 36 | 10.59% |
| Asparagine ASN (N) | 20 | 5.88% |
| Glutamine GLN (Q) | 10 | 2.94% |
| Proline PRO (P) | 17 | 5% |
| Serine SER (S) | 29 | 8.53% |
| Arginine ARG (R) | 19 | 5.59% |
| Threonine THR (T) | 23 | 6.76% |
| Tryptophan TRP (W) | 1 | 0.29% |
| Valine VAL (V) | 26 | 7.65% |
| Tyrosine TYR (Y) | 14 | 4.12% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1641 |
| Hydrogen | H | 2598 |
| Nitrogen | N | 454 |
| Oxygen | O | 507 |
| Sulphur | S | 16 |
| Formula | C1641H2598N454O507S16 |
| Total Number of Atoms: | 5216 |
| Total number of positively charged residues (ARG + LYS): | 35 |
| Total number of negatively charged residues (ASP + GLU): | 35 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 26860 Absorption 0.1% (=1 g/l) 0.720, assuming all pairs of CYS residues form cystines Ext. coefficient 26360 Absorption 0.1% (=1 g/l) 0.706, assuming all CYS residues are reduced |
| Aromaticity: | 0.082 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 32.21 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.00, 26.47, 23.24] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 84.294 |
| Grand average of hydropathicity (GRAVY): | -0.21 |