Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5292 |
| Number of amino acids: | 106 |
| Molecular Weight: | 11996.2 Da |
| Theoretical pI: | 9.47 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 4 | 3.77% |
| Cysteine CYS (C) | 12 | 11.32% |
| Glutamic Acid GLU (E) | 2 | 1.89% |
| Aspartic Acid ASP (D) | 1 | 0.94% |
| Glycine GLY (G) | 8 | 7.55% |
| Phynylalanine PHE (F) | 3 | 2.83% |
| Isoleucine ILE (I) | 3 | 2.83% |
| Histidine HIS (H) | 1 | 0.94% |
| Lysine LYS (K) | 12 | 11.32% |
| Methionine MET (M) | 4 | 3.77% |
| Leucine LEU (L) | 7 | 6.6% |
| Asparagine ASN (N) | 5 | 4.72% |
| Glutamine GLN (Q) | 6 | 5.66% |
| Proline PRO (P) | 6 | 5.66% |
| Serine SER (S) | 8 | 7.55% |
| Arginine ARG (R) | 5 | 4.72% |
| Threonine THR (T) | 6 | 5.66% |
| Tryptophan TRP (W) | 2 | 1.89% |
| Valine VAL (V) | 5 | 4.72% |
| Tyrosine TYR (Y) | 6 | 5.66% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 522 |
| Hydrogen | H | 830 |
| Nitrogen | N | 148 |
| Oxygen | O | 144 |
| Sulphur | S | 16 |
| Formula | C522H830N148O144S16 |
| Total Number of Atoms: | 1660 |
| Total number of positively charged residues (ARG + LYS): | 17 |
| Total number of negatively charged residues (ASP + GLU): | 3 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 20690 Absorption 0.1% (=1 g/l) 1.725, assuming all pairs of CYS residues form cystines Ext. coefficient 19940 Absorption 0.1% (=1 g/l) 1.662, assuming all CYS residues are reduced |
| Aromaticity: | 0.104 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 55.22 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [24.53, 25.47, 16.04] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 54.2453 |
| Grand average of hydropathicity (GRAVY): | -0.38 |