Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5288 |
| Number of amino acids: | 371 |
| Molecular Weight: | 40710.76 Da |
| Theoretical pI: | 5.58 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 30 | 8.09% |
| Cysteine CYS (C) | 9 | 2.43% |
| Glutamic Acid GLU (E) | 24 | 6.47% |
| Aspartic Acid ASP (D) | 22 | 5.93% |
| Glycine GLY (G) | 36 | 9.7% |
| Phynylalanine PHE (F) | 12 | 3.23% |
| Isoleucine ILE (I) | 13 | 3.5% |
| Histidine HIS (H) | 8 | 2.16% |
| Lysine LYS (K) | 18 | 4.85% |
| Methionine MET (M) | 13 | 3.5% |
| Leucine LEU (L) | 27 | 7.28% |
| Asparagine ASN (N) | 30 | 8.09% |
| Glutamine GLN (Q) | 5 | 1.35% |
| Proline PRO (P) | 10 | 2.7% |
| Serine SER (S) | 25 | 6.74% |
| Arginine ARG (R) | 20 | 5.39% |
| Threonine THR (T) | 19 | 5.12% |
| Tryptophan TRP (W) | 5 | 1.35% |
| Valine VAL (V) | 31 | 8.36% |
| Tyrosine TYR (Y) | 14 | 3.77% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1768 |
| Hydrogen | H | 2763 |
| Nitrogen | N | 505 |
| Oxygen | O | 557 |
| Sulphur | S | 22 |
| Formula | C1768H2763N505O557S22 |
| Total Number of Atoms: | 5615 |
| Total number of positively charged residues (ARG + LYS): | 38 |
| Total number of negatively charged residues (ASP + GLU): | 46 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 48860 Absorption 0.1% (=1 g/l) 1.200, assuming all pairs of CYS residues form cystines Ext. coefficient 48360 Absorption 0.1% (=1 g/l) 1.188, assuming all CYS residues are reduced |
| Aromaticity: | 0.084 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 25.65 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.49, 27.22, 25.34] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.3666 |
| Grand average of hydropathicity (GRAVY): | -0.35 |