Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5287 |
| Number of amino acids: | 321 |
| Molecular Weight: | 35123.84 Da |
| Theoretical pI: | 9.3 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 24 | 7.48% |
| Cysteine CYS (C) | 3 | 0.93% |
| Glutamic Acid GLU (E) | 20 | 6.23% |
| Aspartic Acid ASP (D) | 6 | 1.87% |
| Glycine GLY (G) | 26 | 8.1% |
| Phynylalanine PHE (F) | 15 | 4.67% |
| Isoleucine ILE (I) | 32 | 9.97% |
| Histidine HIS (H) | 2 | 0.62% |
| Lysine LYS (K) | 27 | 8.41% |
| Methionine MET (M) | 4 | 1.25% |
| Leucine LEU (L) | 25 | 7.79% |
| Asparagine ASN (N) | 19 | 5.92% |
| Glutamine GLN (Q) | 24 | 7.48% |
| Proline PRO (P) | 21 | 6.54% |
| Serine SER (S) | 14 | 4.36% |
| Arginine ARG (R) | 8 | 2.49% |
| Threonine THR (T) | 17 | 5.3% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 25 | 7.79% |
| Tyrosine TYR (Y) | 9 | 2.8% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1593 |
| Hydrogen | H | 2565 |
| Nitrogen | N | 419 |
| Oxygen | O | 457 |
| Sulphur | S | 7 |
| Formula | C1593H2565N419O457S7 |
| Total Number of Atoms: | 5041 |
| Total number of positively charged residues (ARG + LYS): | 35 |
| Total number of negatively charged residues (ASP + GLU): | 26 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 13535 Absorption 0.1% (=1 g/l) 0.385, assuming all pairs of CYS residues form cystines Ext. coefficient 13410 Absorption 0.1% (=1 g/l) 0.382, assuming all CYS residues are reduced |
| Aromaticity: | 0.075 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 28.77 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [33.02, 24.92, 22.74] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 99.3146 |
| Grand average of hydropathicity (GRAVY): | -0.07 |