Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5281 |
| Number of amino acids: | 310 |
| Molecular Weight: | 33805.62 Da |
| Theoretical pI: | 10 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 27 | 8.71% |
| Cysteine CYS (C) | 9 | 2.9% |
| Glutamic Acid GLU (E) | 9 | 2.9% |
| Aspartic Acid ASP (D) | 17 | 5.48% |
| Glycine GLY (G) | 23 | 7.42% |
| Phynylalanine PHE (F) | 17 | 5.48% |
| Isoleucine ILE (I) | 17 | 5.48% |
| Histidine HIS (H) | 3 | 0.97% |
| Lysine LYS (K) | 9 | 2.9% |
| Methionine MET (M) | 6 | 1.94% |
| Leucine LEU (L) | 26 | 8.39% |
| Asparagine ASN (N) | 14 | 4.52% |
| Glutamine GLN (Q) | 9 | 2.9% |
| Proline PRO (P) | 16 | 5.16% |
| Serine SER (S) | 33 | 10.65% |
| Arginine ARG (R) | 33 | 10.65% |
| Threonine THR (T) | 19 | 6.13% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 19 | 6.13% |
| Tyrosine TYR (Y) | 4 | 1.29% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1465 |
| Hydrogen | H | 2377 |
| Nitrogen | N | 447 |
| Oxygen | O | 442 |
| Sulphur | S | 15 |
| Formula | C1465H2377N447O442S15 |
| Total Number of Atoms: | 4746 |
| Total number of positively charged residues (ARG + LYS): | 42 |
| Total number of negatively charged residues (ASP + GLU): | 26 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 6460 Absorption 0.1% (=1 g/l) 0.191, assuming all pairs of CYS residues form cystines Ext. coefficient 5960 Absorption 0.1% (=1 g/l) 0.176, assuming all CYS residues are reduced |
| Aromaticity: | 0.068 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 45.92 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.77, 27.74, 21.94] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 80.5806 |
| Grand average of hydropathicity (GRAVY): | -0.19 |