Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5279 |
| Number of amino acids: | 310 |
| Molecular Weight: | 34331.55 Da |
| Theoretical pI: | 9.31 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 24 | 7.74% |
| Cysteine CYS (C) | 9 | 2.9% |
| Glutamic Acid GLU (E) | 13 | 4.19% |
| Aspartic Acid ASP (D) | 20 | 6.45% |
| Glycine GLY (G) | 23 | 7.42% |
| Phynylalanine PHE (F) | 18 | 5.81% |
| Isoleucine ILE (I) | 21 | 6.77% |
| Histidine HIS (H) | 5 | 1.61% |
| Lysine LYS (K) | 19 | 6.13% |
| Methionine MET (M) | 8 | 2.58% |
| Leucine LEU (L) | 20 | 6.45% |
| Asparagine ASN (N) | 14 | 4.52% |
| Glutamine GLN (Q) | 8 | 2.58% |
| Proline PRO (P) | 13 | 4.19% |
| Serine SER (S) | 22 | 7.1% |
| Arginine ARG (R) | 25 | 8.06% |
| Threonine THR (T) | 17 | 5.48% |
| Tryptophan TRP (W) | 2 | 0.65% |
| Valine VAL (V) | 25 | 8.06% |
| Tyrosine TYR (Y) | 4 | 1.29% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1510 |
| Hydrogen | H | 2424 |
| Nitrogen | N | 438 |
| Oxygen | O | 442 |
| Sulphur | S | 17 |
| Formula | C1510H2424N438O442S17 |
| Total Number of Atoms: | 4831 |
| Total number of positively charged residues (ARG + LYS): | 44 |
| Total number of negatively charged residues (ASP + GLU): | 33 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 17460 Absorption 0.1% (=1 g/l) 0.509, assuming all pairs of CYS residues form cystines Ext. coefficient 16960 Absorption 0.1% (=1 g/l) 0.494, assuming all CYS residues are reduced |
| Aromaticity: | 0.077 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 29.18 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.03, 23.23, 20.97] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 82.7097 |
| Grand average of hydropathicity (GRAVY): | -0.18 |