Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5278 |
| Number of amino acids: | 254 |
| Molecular Weight: | 29280.41 Da |
| Theoretical pI: | 6.8 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 17 | 6.69% |
| Cysteine CYS (C) | 3 | 1.18% |
| Glutamic Acid GLU (E) | 20 | 7.87% |
| Aspartic Acid ASP (D) | 11 | 4.33% |
| Glycine GLY (G) | 17 | 6.69% |
| Phynylalanine PHE (F) | 16 | 6.3% |
| Isoleucine ILE (I) | 14 | 5.51% |
| Histidine HIS (H) | 8 | 3.15% |
| Lysine LYS (K) | 17 | 6.69% |
| Methionine MET (M) | 5 | 1.97% |
| Leucine LEU (L) | 23 | 9.06% |
| Asparagine ASN (N) | 14 | 5.51% |
| Glutamine GLN (Q) | 7 | 2.76% |
| Proline PRO (P) | 11 | 4.33% |
| Serine SER (S) | 13 | 5.12% |
| Arginine ARG (R) | 13 | 5.12% |
| Threonine THR (T) | 11 | 4.33% |
| Tryptophan TRP (W) | 4 | 1.57% |
| Valine VAL (V) | 16 | 6.3% |
| Tyrosine TYR (Y) | 14 | 5.51% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1336 |
| Hydrogen | H | 2029 |
| Nitrogen | N | 351 |
| Oxygen | O | 376 |
| Sulphur | S | 8 |
| Formula | C1336H2029N351O376S8 |
| Total Number of Atoms: | 4100 |
| Total number of positively charged residues (ARG + LYS): | 30 |
| Total number of negatively charged residues (ASP + GLU): | 31 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 42985 Absorption 0.1% (=1 g/l) 1.468, assuming all pairs of CYS residues form cystines Ext. coefficient 42860 Absorption 0.1% (=1 g/l) 1.464, assuming all CYS residues are reduced |
| Aromaticity: | 0.134 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 34.02 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [34.25, 21.65, 25.59] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.7716 |
| Grand average of hydropathicity (GRAVY): | -0.34 |