Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5267 |
| Number of amino acids: | 408 |
| Molecular Weight: | 44885.92 Da |
| Theoretical pI: | 8.85 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 30 | 7.35% |
| Cysteine CYS (C) | 12 | 2.94% |
| Glutamic Acid GLU (E) | 12 | 2.94% |
| Aspartic Acid ASP (D) | 24 | 5.88% |
| Glycine GLY (G) | 35 | 8.58% |
| Phynylalanine PHE (F) | 15 | 3.68% |
| Isoleucine ILE (I) | 26 | 6.37% |
| Histidine HIS (H) | 18 | 4.41% |
| Lysine LYS (K) | 21 | 5.15% |
| Methionine MET (M) | 8 | 1.96% |
| Leucine LEU (L) | 28 | 6.86% |
| Asparagine ASN (N) | 24 | 5.88% |
| Glutamine GLN (Q) | 8 | 1.96% |
| Proline PRO (P) | 15 | 3.68% |
| Serine SER (S) | 40 | 9.8% |
| Arginine ARG (R) | 23 | 5.64% |
| Threonine THR (T) | 19 | 4.66% |
| Tryptophan TRP (W) | 9 | 2.21% |
| Valine VAL (V) | 30 | 7.35% |
| Tyrosine TYR (Y) | 11 | 2.7% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1978 |
| Hydrogen | H | 3081 |
| Nitrogen | N | 575 |
| Oxygen | O | 583 |
| Sulphur | S | 20 |
| Formula | C1978H3081N575O583S20 |
| Total Number of Atoms: | 6237 |
| Total number of positively charged residues (ARG + LYS): | 44 |
| Total number of negatively charged residues (ASP + GLU): | 36 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 66640 Absorption 0.1% (=1 g/l) 1.485, assuming all pairs of CYS residues form cystines Ext. coefficient 65890 Absorption 0.1% (=1 g/l) 1.468, assuming all CYS residues are reduced |
| Aromaticity: | 0.086 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.15 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.17, 27.94, 19.12] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 80.2941 |
| Grand average of hydropathicity (GRAVY): | -0.24 |