Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5266 |
| Number of amino acids: | 408 |
| Molecular Weight: | 45013.92 Da |
| Theoretical pI: | 8.45 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 23 | 5.64% |
| Cysteine CYS (C) | 11 | 2.7% |
| Glutamic Acid GLU (E) | 14 | 3.43% |
| Aspartic Acid ASP (D) | 23 | 5.64% |
| Glycine GLY (G) | 39 | 9.56% |
| Phynylalanine PHE (F) | 16 | 3.92% |
| Isoleucine ILE (I) | 29 | 7.11% |
| Histidine HIS (H) | 20 | 4.9% |
| Lysine LYS (K) | 18 | 4.41% |
| Methionine MET (M) | 11 | 2.7% |
| Leucine LEU (L) | 25 | 6.13% |
| Asparagine ASN (N) | 22 | 5.39% |
| Glutamine GLN (Q) | 11 | 2.7% |
| Proline PRO (P) | 19 | 4.66% |
| Serine SER (S) | 40 | 9.8% |
| Arginine ARG (R) | 23 | 5.64% |
| Threonine THR (T) | 22 | 5.39% |
| Tryptophan TRP (W) | 9 | 2.21% |
| Valine VAL (V) | 24 | 5.88% |
| Tyrosine TYR (Y) | 9 | 2.21% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1977 |
| Hydrogen | H | 3065 |
| Nitrogen | N | 577 |
| Oxygen | O | 587 |
| Sulphur | S | 22 |
| Formula | C1977H3065N577O587S22 |
| Total Number of Atoms: | 6228 |
| Total number of positively charged residues (ARG + LYS): | 41 |
| Total number of negatively charged residues (ASP + GLU): | 37 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 63535 Absorption 0.1% (=1 g/l) 1.411, assuming all pairs of CYS residues form cystines Ext. coefficient 62910 Absorption 0.1% (=1 g/l) 1.398, assuming all CYS residues are reduced |
| Aromaticity: | 0.083 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.83 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.45, 29.41, 17.89] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 74.3137 |
| Grand average of hydropathicity (GRAVY): | -0.33 |