Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5258 |
| Number of amino acids: | 499 |
| Molecular Weight: | 54096.14 Da |
| Theoretical pI: | 6.45 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 42 | 8.42% |
| Cysteine CYS (C) | 10 | 2% |
| Glutamic Acid GLU (E) | 21 | 4.21% |
| Aspartic Acid ASP (D) | 23 | 4.61% |
| Glycine GLY (G) | 56 | 11.22% |
| Phynylalanine PHE (F) | 21 | 4.21% |
| Isoleucine ILE (I) | 20 | 4.01% |
| Histidine HIS (H) | 15 | 3.01% |
| Lysine LYS (K) | 24 | 4.81% |
| Methionine MET (M) | 8 | 1.6% |
| Leucine LEU (L) | 42 | 8.42% |
| Asparagine ASN (N) | 18 | 3.61% |
| Glutamine GLN (Q) | 12 | 2.4% |
| Proline PRO (P) | 28 | 5.61% |
| Serine SER (S) | 44 | 8.82% |
| Arginine ARG (R) | 16 | 3.21% |
| Threonine THR (T) | 27 | 5.41% |
| Tryptophan TRP (W) | 12 | 2.4% |
| Valine VAL (V) | 34 | 6.81% |
| Tyrosine TYR (Y) | 26 | 5.21% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2444 |
| Hydrogen | H | 3689 |
| Nitrogen | N | 643 |
| Oxygen | O | 715 |
| Sulphur | S | 18 |
| Formula | C2444H3689N643O715S18 |
| Total Number of Atoms: | 7509 |
| Total number of positively charged residues (ARG + LYS): | 40 |
| Total number of negatively charged residues (ASP + GLU): | 44 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 105365 Absorption 0.1% (=1 g/l) 1.948, assuming all pairs of CYS residues form cystines Ext. coefficient 104740 Absorption 0.1% (=1 g/l) 1.936, assuming all CYS residues are reduced |
| Aromaticity: | 0.118 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 44.24 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.06, 29.26, 22.65] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 76.6333 |
| Grand average of hydropathicity (GRAVY): | -0.14 |