Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5250 |
| Number of amino acids: | 284 |
| Molecular Weight: | 30433.21 Da |
| Theoretical pI: | 5.88 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 27 | 9.51% |
| Cysteine CYS (C) | 10 | 3.52% |
| Glutamic Acid GLU (E) | 1 | 0.35% |
| Aspartic Acid ASP (D) | 15 | 5.28% |
| Glycine GLY (G) | 31 | 10.92% |
| Phynylalanine PHE (F) | 10 | 3.52% |
| Isoleucine ILE (I) | 10 | 3.52% |
| Histidine HIS (H) | 5 | 1.76% |
| Lysine LYS (K) | 6 | 2.11% |
| Methionine MET (M) | 4 | 1.41% |
| Leucine LEU (L) | 20 | 7.04% |
| Asparagine ASN (N) | 15 | 5.28% |
| Glutamine GLN (Q) | 14 | 4.93% |
| Proline PRO (P) | 20 | 7.04% |
| Serine SER (S) | 22 | 7.75% |
| Arginine ARG (R) | 7 | 2.46% |
| Threonine THR (T) | 21 | 7.39% |
| Tryptophan TRP (W) | 11 | 3.87% |
| Valine VAL (V) | 21 | 7.39% |
| Tyrosine TYR (Y) | 14 | 4.93% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1368 |
| Hydrogen | H | 2033 |
| Nitrogen | N | 361 |
| Oxygen | O | 403 |
| Sulphur | S | 14 |
| Formula | C1368H2033N361O403S14 |
| Total Number of Atoms: | 4179 |
| Total number of positively charged residues (ARG + LYS): | 13 |
| Total number of negatively charged residues (ASP + GLU): | 16 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 81985 Absorption 0.1% (=1 g/l) 2.694, assuming all pairs of CYS residues form cystines Ext. coefficient 81360 Absorption 0.1% (=1 g/l) 2.673, assuming all CYS residues are reduced |
| Aromaticity: | 0.123 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 34.02 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.28, 30.99, 18.31] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 72.1479 |
| Grand average of hydropathicity (GRAVY): | -0.05 |