Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5245 |
| Number of amino acids: | 349 |
| Molecular Weight: | 38179.5 Da |
| Theoretical pI: | 7.66 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 27 | 7.74% |
| Cysteine CYS (C) | 10 | 2.87% |
| Glutamic Acid GLU (E) | 7 | 2.01% |
| Aspartic Acid ASP (D) | 23 | 6.59% |
| Glycine GLY (G) | 25 | 7.16% |
| Phynylalanine PHE (F) | 23 | 6.59% |
| Isoleucine ILE (I) | 17 | 4.87% |
| Histidine HIS (H) | 3 | 0.86% |
| Lysine LYS (K) | 5 | 1.43% |
| Methionine MET (M) | 6 | 1.72% |
| Leucine LEU (L) | 38 | 10.89% |
| Asparagine ASN (N) | 23 | 6.59% |
| Glutamine GLN (Q) | 13 | 3.72% |
| Proline PRO (P) | 21 | 6.02% |
| Serine SER (S) | 28 | 8.02% |
| Arginine ARG (R) | 26 | 7.45% |
| Threonine THR (T) | 23 | 6.59% |
| Tryptophan TRP (W) | 2 | 0.57% |
| Valine VAL (V) | 23 | 6.59% |
| Tyrosine TYR (Y) | 6 | 1.72% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1688 |
| Hydrogen | H | 2656 |
| Nitrogen | N | 476 |
| Oxygen | O | 503 |
| Sulphur | S | 16 |
| Formula | C1688H2656N476O503S16 |
| Total Number of Atoms: | 5339 |
| Total number of positively charged residues (ARG + LYS): | 31 |
| Total number of negatively charged residues (ASP + GLU): | 30 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 20565 Absorption 0.1% (=1 g/l) 0.539, assuming all pairs of CYS residues form cystines Ext. coefficient 19940 Absorption 0.1% (=1 g/l) 0.522, assuming all CYS residues are reduced |
| Aromaticity: | 0.089 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 30.43 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.23, 27.79, 22.35] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 88.3096 |
| Grand average of hydropathicity (GRAVY): | -0.01 |