Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5236 |
| Number of amino acids: | 515 |
| Molecular Weight: | 56712.73 Da |
| Theoretical pI: | 8.65 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 27 | 5.24% |
| Cysteine CYS (C) | 3 | 0.58% |
| Glutamic Acid GLU (E) | 21 | 4.08% |
| Aspartic Acid ASP (D) | 26 | 5.05% |
| Glycine GLY (G) | 30 | 5.83% |
| Phynylalanine PHE (F) | 23 | 4.47% |
| Isoleucine ILE (I) | 45 | 8.74% |
| Histidine HIS (H) | 6 | 1.17% |
| Lysine LYS (K) | 38 | 7.38% |
| Methionine MET (M) | 17 | 3.3% |
| Leucine LEU (L) | 51 | 9.9% |
| Asparagine ASN (N) | 34 | 6.6% |
| Glutamine GLN (Q) | 14 | 2.72% |
| Proline PRO (P) | 15 | 2.91% |
| Serine SER (S) | 52 | 10.1% |
| Arginine ARG (R) | 13 | 2.52% |
| Threonine THR (T) | 37 | 7.18% |
| Tryptophan TRP (W) | 5 | 0.97% |
| Valine VAL (V) | 46 | 8.93% |
| Tyrosine TYR (Y) | 12 | 2.33% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2547 |
| Hydrogen | H | 4101 |
| Nitrogen | N | 657 |
| Oxygen | O | 759 |
| Sulphur | S | 20 |
| Formula | C2547H4101N657O759S20 |
| Total Number of Atoms: | 8084 |
| Total number of positively charged residues (ARG + LYS): | 51 |
| Total number of negatively charged residues (ASP + GLU): | 47 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 45505 Absorption 0.1% (=1 g/l) 0.802, assuming all pairs of CYS residues form cystines Ext. coefficient 45380 Absorption 0.1% (=1 g/l) 0.800, assuming all CYS residues are reduced |
| Aromaticity: | 0.078 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.58 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [35.34, 25.44, 22.52] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 103.845 |
| Grand average of hydropathicity (GRAVY): | 0.12 |