Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5229 |
| Number of amino acids: | 500 |
| Molecular Weight: | 56808.04 Da |
| Theoretical pI: | 9 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 37 | 7.4% |
| Cysteine CYS (C) | 8 | 1.6% |
| Glutamic Acid GLU (E) | 32 | 6.4% |
| Aspartic Acid ASP (D) | 10 | 2% |
| Glycine GLY (G) | 35 | 7% |
| Phynylalanine PHE (F) | 28 | 5.6% |
| Isoleucine ILE (I) | 24 | 4.8% |
| Histidine HIS (H) | 12 | 2.4% |
| Lysine LYS (K) | 15 | 3% |
| Methionine MET (M) | 7 | 1.4% |
| Leucine LEU (L) | 43 | 8.6% |
| Asparagine ASN (N) | 40 | 8% |
| Glutamine GLN (Q) | 53 | 10.6% |
| Proline PRO (P) | 23 | 4.6% |
| Serine SER (S) | 29 | 5.8% |
| Arginine ARG (R) | 35 | 7% |
| Threonine THR (T) | 16 | 3.2% |
| Tryptophan TRP (W) | 3 | 0.6% |
| Valine VAL (V) | 32 | 6.4% |
| Tyrosine TYR (Y) | 18 | 3.6% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2512 |
| Hydrogen | H | 3904 |
| Nitrogen | N | 740 |
| Oxygen | O | 741 |
| Sulphur | S | 15 |
| Formula | C2512H3904N740O741S15 |
| Total Number of Atoms: | 7912 |
| Total number of positively charged residues (ARG + LYS): | 50 |
| Total number of negatively charged residues (ASP + GLU): | 42 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 43820 Absorption 0.1% (=1 g/l) 0.771, assuming all pairs of CYS residues form cystines Ext. coefficient 43320 Absorption 0.1% (=1 g/l) 0.763, assuming all CYS residues are reduced |
| Aromaticity: | 0.098 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 46.98 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.60, 25.40, 23.80] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 78.22 |
| Grand average of hydropathicity (GRAVY): | -0.51 |