Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5218 |
| Number of amino acids: | 458 |
| Molecular Weight: | 50408.55 Da |
| Theoretical pI: | 6.22 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 35 | 7.64% |
| Cysteine CYS (C) | 2 | 0.44% |
| Glutamic Acid GLU (E) | 32 | 6.99% |
| Aspartic Acid ASP (D) | 25 | 5.46% |
| Glycine GLY (G) | 35 | 7.64% |
| Phynylalanine PHE (F) | 18 | 3.93% |
| Isoleucine ILE (I) | 24 | 5.24% |
| Histidine HIS (H) | 12 | 2.62% |
| Lysine LYS (K) | 25 | 5.46% |
| Methionine MET (M) | 9 | 1.97% |
| Leucine LEU (L) | 50 | 10.92% |
| Asparagine ASN (N) | 16 | 3.49% |
| Glutamine GLN (Q) | 18 | 3.93% |
| Proline PRO (P) | 33 | 7.21% |
| Serine SER (S) | 35 | 7.64% |
| Arginine ARG (R) | 27 | 5.9% |
| Threonine THR (T) | 17 | 3.71% |
| Tryptophan TRP (W) | 1 | 0.22% |
| Valine VAL (V) | 32 | 6.99% |
| Tyrosine TYR (Y) | 12 | 2.62% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2247 |
| Hydrogen | H | 3577 |
| Nitrogen | N | 623 |
| Oxygen | O | 671 |
| Sulphur | S | 11 |
| Formula | C2247H3577N623O671S11 |
| Total Number of Atoms: | 7129 |
| Total number of positively charged residues (ARG + LYS): | 52 |
| Total number of negatively charged residues (ASP + GLU): | 57 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 23505 Absorption 0.1% (=1 g/l) 0.466, assuming all pairs of CYS residues form cystines Ext. coefficient 23380 Absorption 0.1% (=1 g/l) 0.464, assuming all CYS residues are reduced |
| Aromaticity: | 0.068 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 51.18 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.91, 25.98, 27.51] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 90.9169 |
| Grand average of hydropathicity (GRAVY): | -0.29 |