Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5203 |
| Number of amino acids: | 398 |
| Molecular Weight: | 43664.62 Da |
| Theoretical pI: | 6.67 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 33 | 8.29% |
| Cysteine CYS (C) | 12 | 3.02% |
| Glutamic Acid GLU (E) | 12 | 3.02% |
| Aspartic Acid ASP (D) | 29 | 7.29% |
| Glycine GLY (G) | 32 | 8.04% |
| Phynylalanine PHE (F) | 15 | 3.77% |
| Isoleucine ILE (I) | 27 | 6.78% |
| Histidine HIS (H) | 12 | 3.02% |
| Lysine LYS (K) | 20 | 5.03% |
| Methionine MET (M) | 9 | 2.26% |
| Leucine LEU (L) | 32 | 8.04% |
| Asparagine ASN (N) | 27 | 6.78% |
| Glutamine GLN (Q) | 16 | 4.02% |
| Proline PRO (P) | 16 | 4.02% |
| Serine SER (S) | 25 | 6.28% |
| Arginine ARG (R) | 19 | 4.77% |
| Threonine THR (T) | 22 | 5.53% |
| Tryptophan TRP (W) | 7 | 1.76% |
| Valine VAL (V) | 26 | 6.53% |
| Tyrosine TYR (Y) | 7 | 1.76% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1916 |
| Hydrogen | H | 3017 |
| Nitrogen | N | 549 |
| Oxygen | O | 578 |
| Sulphur | S | 21 |
| Formula | C1916H3017N549O578S21 |
| Total Number of Atoms: | 6081 |
| Total number of positively charged residues (ARG + LYS): | 39 |
| Total number of negatively charged residues (ASP + GLU): | 41 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 49680 Absorption 0.1% (=1 g/l) 1.138, assuming all pairs of CYS residues form cystines Ext. coefficient 48930 Absorption 0.1% (=1 g/l) 1.121, assuming all CYS residues are reduced |
| Aromaticity: | 0.073 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.99 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.64, 25.13, 21.61] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 85.0502 |
| Grand average of hydropathicity (GRAVY): | -0.21 |