Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5202 |
| Number of amino acids: | 623 |
| Molecular Weight: | 68991.69 Da |
| Theoretical pI: | 5.93 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 36 | 5.78% |
| Cysteine CYS (C) | 35 | 5.62% |
| Glutamic Acid GLU (E) | 37 | 5.94% |
| Aspartic Acid ASP (D) | 42 | 6.74% |
| Glycine GLY (G) | 57 | 9.15% |
| Phynylalanine PHE (F) | 20 | 3.21% |
| Isoleucine ILE (I) | 35 | 5.62% |
| Histidine HIS (H) | 10 | 1.61% |
| Lysine LYS (K) | 52 | 8.35% |
| Methionine MET (M) | 13 | 2.09% |
| Leucine LEU (L) | 44 | 7.06% |
| Asparagine ASN (N) | 26 | 4.17% |
| Glutamine GLN (Q) | 22 | 3.53% |
| Proline PRO (P) | 26 | 4.17% |
| Serine SER (S) | 37 | 5.94% |
| Arginine ARG (R) | 20 | 3.21% |
| Threonine THR (T) | 38 | 6.1% |
| Tryptophan TRP (W) | 12 | 1.93% |
| Valine VAL (V) | 37 | 5.94% |
| Tyrosine TYR (Y) | 24 | 3.85% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 3031 |
| Hydrogen | H | 4731 |
| Nitrogen | N | 815 |
| Oxygen | O | 929 |
| Sulphur | S | 48 |
| Formula | C3031H4731N815O929S48 |
| Total Number of Atoms: | 9554 |
| Total number of positively charged residues (ARG + LYS): | 72 |
| Total number of negatively charged residues (ASP + GLU): | 79 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 103885 Absorption 0.1% (=1 g/l) 1.506, assuming all pairs of CYS residues form cystines Ext. coefficient 101760 Absorption 0.1% (=1 g/l) 1.475, assuming all CYS residues are reduced |
| Aromaticity: | 0.090 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 29.74 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [27.61, 23.43, 20.87] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 72.4559 |
| Grand average of hydropathicity (GRAVY): | -0.35 |