Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5194 |
| Number of amino acids: | 449 |
| Molecular Weight: | 50893.08 Da |
| Theoretical pI: | 8.57 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 25 | 5.57% |
| Cysteine CYS (C) | 9 | 2% |
| Glutamic Acid GLU (E) | 19 | 4.23% |
| Aspartic Acid ASP (D) | 30 | 6.68% |
| Glycine GLY (G) | 42 | 9.35% |
| Phynylalanine PHE (F) | 17 | 3.79% |
| Isoleucine ILE (I) | 40 | 8.91% |
| Histidine HIS (H) | 20 | 4.45% |
| Lysine LYS (K) | 30 | 6.68% |
| Methionine MET (M) | 18 | 4.01% |
| Leucine LEU (L) | 20 | 4.45% |
| Asparagine ASN (N) | 24 | 5.35% |
| Glutamine GLN (Q) | 12 | 2.67% |
| Proline PRO (P) | 19 | 4.23% |
| Serine SER (S) | 23 | 5.12% |
| Arginine ARG (R) | 24 | 5.35% |
| Threonine THR (T) | 26 | 5.79% |
| Tryptophan TRP (W) | 12 | 2.67% |
| Valine VAL (V) | 23 | 5.12% |
| Tyrosine TYR (Y) | 16 | 3.56% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2263 |
| Hydrogen | H | 3485 |
| Nitrogen | N | 639 |
| Oxygen | O | 649 |
| Sulphur | S | 27 |
| Formula | C2263H3485N639O649S27 |
| Total Number of Atoms: | 7063 |
| Total number of positively charged residues (ARG + LYS): | 54 |
| Total number of negatively charged residues (ASP + GLU): | 49 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 90340 Absorption 0.1% (=1 g/l) 1.775, assuming all pairs of CYS residues form cystines Ext. coefficient 89840 Absorption 0.1% (=1 g/l) 1.765, assuming all CYS residues are reduced |
| Aromaticity: | 0.100 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.55 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.51, 24.05, 18.26] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 72.539 |
| Grand average of hydropathicity (GRAVY): | -0.45 |