Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5178 |
| Number of amino acids: | 579 |
| Molecular Weight: | 64667.64 Da |
| Theoretical pI: | 6.09 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 34 | 5.87% |
| Cysteine CYS (C) | 7 | 1.21% |
| Glutamic Acid GLU (E) | 30 | 5.18% |
| Aspartic Acid ASP (D) | 25 | 4.32% |
| Glycine GLY (G) | 49 | 8.46% |
| Phynylalanine PHE (F) | 30 | 5.18% |
| Isoleucine ILE (I) | 41 | 7.08% |
| Histidine HIS (H) | 21 | 3.63% |
| Lysine LYS (K) | 27 | 4.66% |
| Methionine MET (M) | 12 | 2.07% |
| Leucine LEU (L) | 46 | 7.94% |
| Asparagine ASN (N) | 39 | 6.74% |
| Glutamine GLN (Q) | 17 | 2.94% |
| Proline PRO (P) | 48 | 8.29% |
| Serine SER (S) | 32 | 5.53% |
| Arginine ARG (R) | 18 | 3.11% |
| Threonine THR (T) | 32 | 5.53% |
| Tryptophan TRP (W) | 14 | 2.42% |
| Valine VAL (V) | 35 | 6.04% |
| Tyrosine TYR (Y) | 22 | 3.8% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2951 |
| Hydrogen | H | 4454 |
| Nitrogen | N | 772 |
| Oxygen | O | 832 |
| Sulphur | S | 19 |
| Formula | C2951H4454N772O832S19 |
| Total Number of Atoms: | 9028 |
| Total number of positively charged residues (ARG + LYS): | 45 |
| Total number of negatively charged residues (ASP + GLU): | 55 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 110155 Absorption 0.1% (=1 g/l) 1.703, assuming all pairs of CYS residues form cystines Ext. coefficient 109780 Absorption 0.1% (=1 g/l) 1.698, assuming all CYS residues are reduced |
| Aromaticity: | 0.114 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.20 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.47, 29.02, 21.07] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 82.0034 |
| Grand average of hydropathicity (GRAVY): | -0.23 |