Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5175 |
| Number of amino acids: | 340 |
| Molecular Weight: | 36409.56 Da |
| Theoretical pI: | 4.48 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 24 | 7.06% |
| Cysteine CYS (C) | 21 | 6.18% |
| Glutamic Acid GLU (E) | 11 | 3.24% |
| Aspartic Acid ASP (D) | 28 | 8.24% |
| Glycine GLY (G) | 52 | 15.29% |
| Phynylalanine PHE (F) | 15 | 4.41% |
| Isoleucine ILE (I) | 15 | 4.41% |
| Histidine HIS (H) | 2 | 0.59% |
| Lysine LYS (K) | 14 | 4.12% |
| Methionine MET (M) | 4 | 1.18% |
| Leucine LEU (L) | 24 | 7.06% |
| Asparagine ASN (N) | 13 | 3.82% |
| Glutamine GLN (Q) | 14 | 4.12% |
| Proline PRO (P) | 20 | 5.88% |
| Serine SER (S) | 22 | 6.47% |
| Arginine ARG (R) | 10 | 2.94% |
| Threonine THR (T) | 15 | 4.41% |
| Tryptophan TRP (W) | 8 | 2.35% |
| Valine VAL (V) | 9 | 2.65% |
| Tyrosine TYR (Y) | 19 | 5.59% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1603 |
| Hydrogen | H | 2379 |
| Nitrogen | N | 423 |
| Oxygen | O | 502 |
| Sulphur | S | 25 |
| Formula | C1603H2379N423O502S25 |
| Total Number of Atoms: | 4932 |
| Total number of positively charged residues (ARG + LYS): | 24 |
| Total number of negatively charged residues (ASP + GLU): | 39 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 73560 Absorption 0.1% (=1 g/l) 2.020, assuming all pairs of CYS residues form cystines Ext. coefficient 72310 Absorption 0.1% (=1 g/l) 1.986, assuming all CYS residues are reduced |
| Aromaticity: | 0.124 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.53 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.47, 31.47, 18.53] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 59.4706 |
| Grand average of hydropathicity (GRAVY): | -0.32 |