Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5171 |
| Number of amino acids: | 240 |
| Molecular Weight: | 25789.27 Da |
| Theoretical pI: | 5.67 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 22 | 9.17% |
| Cysteine CYS (C) | 10 | 4.17% |
| Glutamic Acid GLU (E) | 2 | 0.83% |
| Aspartic Acid ASP (D) | 10 | 4.17% |
| Glycine GLY (G) | 34 | 14.17% |
| Phynylalanine PHE (F) | 11 | 4.58% |
| Isoleucine ILE (I) | 15 | 6.25% |
| Histidine HIS (H) | 1 | 0.42% |
| Lysine LYS (K) | 5 | 2.08% |
| Methionine MET (M) | 6 | 2.5% |
| Leucine LEU (L) | 17 | 7.08% |
| Asparagine ASN (N) | 14 | 5.83% |
| Glutamine GLN (Q) | 12 | 5% |
| Proline PRO (P) | 8 | 3.33% |
| Serine SER (S) | 15 | 6.25% |
| Arginine ARG (R) | 6 | 2.5% |
| Threonine THR (T) | 16 | 6.67% |
| Tryptophan TRP (W) | 9 | 3.75% |
| Valine VAL (V) | 13 | 5.42% |
| Tyrosine TYR (Y) | 14 | 5.83% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1162 |
| Hydrogen | H | 1728 |
| Nitrogen | N | 300 |
| Oxygen | O | 336 |
| Sulphur | S | 16 |
| Formula | C1162H1728N300O336S16 |
| Total Number of Atoms: | 3542 |
| Total number of positively charged residues (ARG + LYS): | 11 |
| Total number of negatively charged residues (ASP + GLU): | 12 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 70985 Absorption 0.1% (=1 g/l) 2.752, assuming all pairs of CYS residues form cystines Ext. coefficient 70360 Absorption 0.1% (=1 g/l) 2.728, assuming all CYS residues are reduced |
| Aromaticity: | 0.142 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.00 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.92, 29.58, 19.58] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 76.875 |
| Grand average of hydropathicity (GRAVY): | 0.14 |