Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5170 |
| Number of amino acids: | 489 |
| Molecular Weight: | 54630.29 Da |
| Theoretical pI: | 7.74 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 39 | 7.98% |
| Cysteine CYS (C) | 6 | 1.23% |
| Glutamic Acid GLU (E) | 17 | 3.48% |
| Aspartic Acid ASP (D) | 33 | 6.75% |
| Glycine GLY (G) | 40 | 8.18% |
| Phynylalanine PHE (F) | 26 | 5.32% |
| Isoleucine ILE (I) | 20 | 4.09% |
| Histidine HIS (H) | 13 | 2.66% |
| Lysine LYS (K) | 28 | 5.73% |
| Methionine MET (M) | 17 | 3.48% |
| Leucine LEU (L) | 42 | 8.59% |
| Asparagine ASN (N) | 18 | 3.68% |
| Glutamine GLN (Q) | 17 | 3.48% |
| Proline PRO (P) | 25 | 5.11% |
| Serine SER (S) | 38 | 7.77% |
| Arginine ARG (R) | 23 | 4.7% |
| Threonine THR (T) | 21 | 4.29% |
| Tryptophan TRP (W) | 7 | 1.43% |
| Valine VAL (V) | 33 | 6.75% |
| Tyrosine TYR (Y) | 26 | 5.32% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2463 |
| Hydrogen | H | 3760 |
| Nitrogen | N | 654 |
| Oxygen | O | 710 |
| Sulphur | S | 23 |
| Formula | C2463H3760N654O710S23 |
| Total Number of Atoms: | 7610 |
| Total number of positively charged residues (ARG + LYS): | 51 |
| Total number of negatively charged residues (ASP + GLU): | 50 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 77615 Absorption 0.1% (=1 g/l) 1.421, assuming all pairs of CYS residues form cystines Ext. coefficient 77240 Absorption 0.1% (=1 g/l) 1.414, assuming all CYS residues are reduced |
| Aromaticity: | 0.121 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.22 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.49, 24.74, 23.52] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 76.9939 |
| Grand average of hydropathicity (GRAVY): | -0.23 |