Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5164 |
| Number of amino acids: | 371 |
| Molecular Weight: | 40358.26 Da |
| Theoretical pI: | 5.86 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 43 | 11.59% |
| Cysteine CYS (C) | 8 | 2.16% |
| Glutamic Acid GLU (E) | 23 | 6.2% |
| Aspartic Acid ASP (D) | 23 | 6.2% |
| Glycine GLY (G) | 35 | 9.43% |
| Phynylalanine PHE (F) | 12 | 3.23% |
| Isoleucine ILE (I) | 10 | 2.7% |
| Histidine HIS (H) | 12 | 3.23% |
| Lysine LYS (K) | 17 | 4.58% |
| Methionine MET (M) | 9 | 2.43% |
| Leucine LEU (L) | 23 | 6.2% |
| Asparagine ASN (N) | 15 | 4.04% |
| Glutamine GLN (Q) | 11 | 2.96% |
| Proline PRO (P) | 16 | 4.31% |
| Serine SER (S) | 27 | 7.28% |
| Arginine ARG (R) | 21 | 5.66% |
| Threonine THR (T) | 13 | 3.5% |
| Tryptophan TRP (W) | 8 | 2.16% |
| Valine VAL (V) | 33 | 8.89% |
| Tyrosine TYR (Y) | 12 | 3.23% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1770 |
| Hydrogen | H | 2731 |
| Nitrogen | N | 509 |
| Oxygen | O | 542 |
| Sulphur | S | 17 |
| Formula | C1770H2731N509O542S17 |
| Total Number of Atoms: | 5569 |
| Total number of positively charged residues (ARG + LYS): | 38 |
| Total number of negatively charged residues (ASP + GLU): | 46 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 62380 Absorption 0.1% (=1 g/l) 1.546, assuming all pairs of CYS residues form cystines Ext. coefficient 61880 Absorption 0.1% (=1 g/l) 1.533, assuming all CYS residues are reduced |
| Aromaticity: | 0.086 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.69 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.42, 25.07, 26.42] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 72.0755 |
| Grand average of hydropathicity (GRAVY): | -0.34 |