Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5128 |
| Number of amino acids: | 335 |
| Molecular Weight: | 34989.12 Da |
| Theoretical pI: | 4.72 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 30 | 8.96% |
| Cysteine CYS (C) | 9 | 2.69% |
| Glutamic Acid GLU (E) | 6 | 1.79% |
| Aspartic Acid ASP (D) | 17 | 5.07% |
| Glycine GLY (G) | 26 | 7.76% |
| Phynylalanine PHE (F) | 19 | 5.67% |
| Isoleucine ILE (I) | 21 | 6.27% |
| Histidine HIS (H) | 3 | 0.9% |
| Lysine LYS (K) | 5 | 1.49% |
| Methionine MET (M) | 3 | 0.9% |
| Leucine LEU (L) | 36 | 10.75% |
| Asparagine ASN (N) | 31 | 9.25% |
| Glutamine GLN (Q) | 14 | 4.18% |
| Proline PRO (P) | 12 | 3.58% |
| Serine SER (S) | 45 | 13.43% |
| Arginine ARG (R) | 10 | 2.99% |
| Threonine THR (T) | 27 | 8.06% |
| Tryptophan TRP (W) | 1 | 0.3% |
| Valine VAL (V) | 18 | 5.37% |
| Tyrosine TYR (Y) | 2 | 0.6% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1519 |
| Hydrogen | H | 2414 |
| Nitrogen | N | 422 |
| Oxygen | O | 501 |
| Sulphur | S | 12 |
| Formula | C1519H2414N422O501S12 |
| Total Number of Atoms: | 4868 |
| Total number of positively charged residues (ARG + LYS): | 15 |
| Total number of negatively charged residues (ASP + GLU): | 23 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 8980 Absorption 0.1% (=1 g/l) 0.257, assuming all pairs of CYS residues form cystines Ext. coefficient 8480 Absorption 0.1% (=1 g/l) 0.242, assuming all CYS residues are reduced |
| Aromaticity: | 0.066 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.54 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.96, 34.03, 22.39] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 90.8956 |
| Grand average of hydropathicity (GRAVY): | 0.13 |