Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5120 |
| Number of amino acids: | 645 |
| Molecular Weight: | 71619.8 Da |
| Theoretical pI: | 7.12 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 39 | 6.05% |
| Cysteine CYS (C) | 15 | 2.33% |
| Glutamic Acid GLU (E) | 31 | 4.81% |
| Aspartic Acid ASP (D) | 34 | 5.27% |
| Glycine GLY (G) | 42 | 6.51% |
| Phynylalanine PHE (F) | 32 | 4.96% |
| Isoleucine ILE (I) | 35 | 5.43% |
| Histidine HIS (H) | 7 | 1.09% |
| Lysine LYS (K) | 31 | 4.81% |
| Methionine MET (M) | 18 | 2.79% |
| Leucine LEU (L) | 63 | 9.77% |
| Asparagine ASN (N) | 31 | 4.81% |
| Glutamine GLN (Q) | 25 | 3.88% |
| Proline PRO (P) | 23 | 3.57% |
| Serine SER (S) | 65 | 10.08% |
| Arginine ARG (R) | 34 | 5.27% |
| Threonine THR (T) | 44 | 6.82% |
| Tryptophan TRP (W) | 4 | 0.62% |
| Valine VAL (V) | 47 | 7.29% |
| Tyrosine TYR (Y) | 25 | 3.88% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 3174 |
| Hydrogen | H | 5010 |
| Nitrogen | N | 852 |
| Oxygen | O | 966 |
| Sulphur | S | 33 |
| Formula | C3174H5010N852O966S33 |
| Total Number of Atoms: | 10035 |
| Total number of positively charged residues (ARG + LYS): | 65 |
| Total number of negatively charged residues (ASP + GLU): | 65 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 60125 Absorption 0.1% (=1 g/l) 0.840, assuming all pairs of CYS residues form cystines Ext. coefficient 59250 Absorption 0.1% (=1 g/l) 0.827, assuming all CYS residues are reduced |
| Aromaticity: | 0.095 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 44.76 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.94, 24.96, 23.41] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 86.4341 |
| Grand average of hydropathicity (GRAVY): | -0.10 |