Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5112 |
| Number of amino acids: | 480 |
| Molecular Weight: | 52700.03 Da |
| Theoretical pI: | 6.02 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 41 | 8.54% |
| Cysteine CYS (C) | 6 | 1.25% |
| Glutamic Acid GLU (E) | 18 | 3.75% |
| Aspartic Acid ASP (D) | 24 | 5% |
| Glycine GLY (G) | 37 | 7.71% |
| Phynylalanine PHE (F) | 25 | 5.21% |
| Isoleucine ILE (I) | 22 | 4.58% |
| Histidine HIS (H) | 7 | 1.46% |
| Lysine LYS (K) | 26 | 5.42% |
| Methionine MET (M) | 9 | 1.88% |
| Leucine LEU (L) | 41 | 8.54% |
| Asparagine ASN (N) | 28 | 5.83% |
| Glutamine GLN (Q) | 18 | 3.75% |
| Proline PRO (P) | 18 | 3.75% |
| Serine SER (S) | 58 | 12.08% |
| Arginine ARG (R) | 12 | 2.5% |
| Threonine THR (T) | 31 | 6.46% |
| Tryptophan TRP (W) | 9 | 1.88% |
| Valine VAL (V) | 23 | 4.79% |
| Tyrosine TYR (Y) | 27 | 5.63% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2366 |
| Hydrogen | H | 3583 |
| Nitrogen | N | 611 |
| Oxygen | O | 727 |
| Sulphur | S | 15 |
| Formula | C2366H3583N611O727S15 |
| Total Number of Atoms: | 7302 |
| Total number of positively charged residues (ARG + LYS): | 38 |
| Total number of negatively charged residues (ASP + GLU): | 42 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 90105 Absorption 0.1% (=1 g/l) 1.710, assuming all pairs of CYS residues form cystines Ext. coefficient 89730 Absorption 0.1% (=1 g/l) 1.703, assuming all CYS residues are reduced |
| Aromaticity: | 0.127 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 29.41 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.62, 29.38, 22.71] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 73.625 |
| Grand average of hydropathicity (GRAVY): | -0.24 |