Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5105 |
| Number of amino acids: | 425 |
| Molecular Weight: | 47000.94 Da |
| Theoretical pI: | 8.72 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 28 | 6.59% |
| Cysteine CYS (C) | 18 | 4.24% |
| Glutamic Acid GLU (E) | 8 | 1.88% |
| Aspartic Acid ASP (D) | 20 | 4.71% |
| Glycine GLY (G) | 29 | 6.82% |
| Phynylalanine PHE (F) | 13 | 3.06% |
| Isoleucine ILE (I) | 23 | 5.41% |
| Histidine HIS (H) | 9 | 2.12% |
| Lysine LYS (K) | 23 | 5.41% |
| Methionine MET (M) | 13 | 3.06% |
| Leucine LEU (L) | 29 | 6.82% |
| Asparagine ASN (N) | 26 | 6.12% |
| Glutamine GLN (Q) | 23 | 5.41% |
| Proline PRO (P) | 29 | 6.82% |
| Serine SER (S) | 34 | 8% |
| Arginine ARG (R) | 14 | 3.29% |
| Threonine THR (T) | 27 | 6.35% |
| Tryptophan TRP (W) | 12 | 2.82% |
| Valine VAL (V) | 32 | 7.53% |
| Tyrosine TYR (Y) | 15 | 3.53% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2087 |
| Hydrogen | H | 3233 |
| Nitrogen | N | 569 |
| Oxygen | O | 607 |
| Sulphur | S | 31 |
| Formula | C2087H3233N569O607S31 |
| Total Number of Atoms: | 6527 |
| Total number of positively charged residues (ARG + LYS): | 37 |
| Total number of negatively charged residues (ASP + GLU): | 28 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 89475 Absorption 0.1% (=1 g/l) 1.904, assuming all pairs of CYS residues form cystines Ext. coefficient 88350 Absorption 0.1% (=1 g/l) 1.880, assuming all CYS residues are reduced |
| Aromaticity: | 0.094 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 33.24 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.18, 27.76, 18.35] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 76.1412 |
| Grand average of hydropathicity (GRAVY): | -0.19 |