Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5083 |
| Number of amino acids: | 278 |
| Molecular Weight: | 29974.4 Da |
| Theoretical pI: | 9.02 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 31 | 11.15% |
| Cysteine CYS (C) | 8 | 2.88% |
| Glutamic Acid GLU (E) | 2 | 0.72% |
| Aspartic Acid ASP (D) | 13 | 4.68% |
| Glycine GLY (G) | 26 | 9.35% |
| Phynylalanine PHE (F) | 11 | 3.96% |
| Isoleucine ILE (I) | 9 | 3.24% |
| Histidine HIS (H) | 4 | 1.44% |
| Lysine LYS (K) | 11 | 3.96% |
| Methionine MET (M) | 13 | 4.68% |
| Leucine LEU (L) | 17 | 6.12% |
| Asparagine ASN (N) | 15 | 5.4% |
| Glutamine GLN (Q) | 10 | 3.6% |
| Proline PRO (P) | 22 | 7.91% |
| Serine SER (S) | 18 | 6.47% |
| Arginine ARG (R) | 11 | 3.96% |
| Threonine THR (T) | 20 | 7.19% |
| Tryptophan TRP (W) | 9 | 3.24% |
| Valine VAL (V) | 19 | 6.83% |
| Tyrosine TYR (Y) | 9 | 3.24% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1336 |
| Hydrogen | H | 2044 |
| Nitrogen | N | 364 |
| Oxygen | O | 381 |
| Sulphur | S | 21 |
| Formula | C1336H2044N364O381S21 |
| Total Number of Atoms: | 4146 |
| Total number of positively charged residues (ARG + LYS): | 22 |
| Total number of negatively charged residues (ASP + GLU): | 15 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 63410 Absorption 0.1% (=1 g/l) 2.115, assuming all pairs of CYS residues form cystines Ext. coefficient 62910 Absorption 0.1% (=1 g/l) 2.099, assuming all CYS residues are reduced |
| Aromaticity: | 0.104 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.76 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [26.62, 29.14, 22.66] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 67.4461 |
| Grand average of hydropathicity (GRAVY): | -0.08 |