Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5065 |
| Number of amino acids: | 280 |
| Molecular Weight: | 29124.58 Da |
| Theoretical pI: | 8.31 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 37 | 13.21% |
| Cysteine CYS (C) | 16 | 5.71% |
| Glutamic Acid GLU (E) | 7 | 2.5% |
| Aspartic Acid ASP (D) | 8 | 2.86% |
| Glycine GLY (G) | 47 | 16.79% |
| Phynylalanine PHE (F) | 14 | 5% |
| Isoleucine ILE (I) | 11 | 3.93% |
| Histidine HIS (H) | 5 | 1.79% |
| Lysine LYS (K) | 8 | 2.86% |
| Methionine MET (M) | 4 | 1.43% |
| Leucine LEU (L) | 13 | 4.64% |
| Asparagine ASN (N) | 24 | 8.57% |
| Glutamine GLN (Q) | 13 | 4.64% |
| Proline PRO (P) | 13 | 4.64% |
| Serine SER (S) | 11 | 3.93% |
| Arginine ARG (R) | 11 | 3.93% |
| Threonine THR (T) | 9 | 3.21% |
| Tryptophan TRP (W) | 4 | 1.43% |
| Valine VAL (V) | 12 | 4.29% |
| Tyrosine TYR (Y) | 13 | 4.64% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1270 |
| Hydrogen | H | 1908 |
| Nitrogen | N | 372 |
| Oxygen | O | 381 |
| Sulphur | S | 20 |
| Formula | C1270H1908N372O381S20 |
| Total Number of Atoms: | 3951 |
| Total number of positively charged residues (ARG + LYS): | 19 |
| Total number of negatively charged residues (ASP + GLU): | 15 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 42370 Absorption 0.1% (=1 g/l) 1.455, assuming all pairs of CYS residues form cystines Ext. coefficient 41370 Absorption 0.1% (=1 g/l) 1.420, assuming all CYS residues are reduced |
| Aromaticity: | 0.111 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 29.70 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [23.93, 33.93, 21.79] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 59.0714 |
| Grand average of hydropathicity (GRAVY): | -0.18 |