Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5064 |
| Number of amino acids: | 670 |
| Molecular Weight: | 71932.82 Da |
| Theoretical pI: | 5.06 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 79 | 11.79% |
| Cysteine CYS (C) | 5 | 0.75% |
| Glutamic Acid GLU (E) | 24 | 3.58% |
| Aspartic Acid ASP (D) | 54 | 8.06% |
| Glycine GLY (G) | 59 | 8.81% |
| Phynylalanine PHE (F) | 18 | 2.69% |
| Isoleucine ILE (I) | 16 | 2.39% |
| Histidine HIS (H) | 15 | 2.24% |
| Lysine LYS (K) | 21 | 3.13% |
| Methionine MET (M) | 8 | 1.19% |
| Leucine LEU (L) | 62 | 9.25% |
| Asparagine ASN (N) | 18 | 2.69% |
| Glutamine GLN (Q) | 17 | 2.54% |
| Proline PRO (P) | 45 | 6.72% |
| Serine SER (S) | 45 | 6.72% |
| Arginine ARG (R) | 34 | 5.07% |
| Threonine THR (T) | 45 | 6.72% |
| Tryptophan TRP (W) | 18 | 2.69% |
| Valine VAL (V) | 64 | 9.55% |
| Tyrosine TYR (Y) | 23 | 3.43% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 3218 |
| Hydrogen | H | 4956 |
| Nitrogen | N | 876 |
| Oxygen | O | 975 |
| Sulphur | S | 13 |
| Formula | C3218H4956N876O975S13 |
| Total Number of Atoms: | 10038 |
| Total number of positively charged residues (ARG + LYS): | 55 |
| Total number of negatively charged residues (ASP + GLU): | 78 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 133520 Absorption 0.1% (=1 g/l) 1.856, assuming all pairs of CYS residues form cystines Ext. coefficient 133270 Absorption 0.1% (=1 g/l) 1.853, assuming all CYS residues are reduced |
| Aromaticity: | 0.088 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 34.17 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.00, 24.93, 25.82] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 84.8955 |
| Grand average of hydropathicity (GRAVY): | -0.14 |