Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5060 |
| Number of amino acids: | 508 |
| Molecular Weight: | 56364.51 Da |
| Theoretical pI: | 4.9 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 45 | 8.86% |
| Cysteine CYS (C) | 5 | 0.98% |
| Glutamic Acid GLU (E) | 49 | 9.65% |
| Aspartic Acid ASP (D) | 32 | 6.3% |
| Glycine GLY (G) | 25 | 4.92% |
| Phynylalanine PHE (F) | 38 | 7.48% |
| Isoleucine ILE (I) | 23 | 4.53% |
| Histidine HIS (H) | 9 | 1.77% |
| Lysine LYS (K) | 47 | 9.25% |
| Methionine MET (M) | 4 | 0.79% |
| Leucine LEU (L) | 36 | 7.09% |
| Asparagine ASN (N) | 22 | 4.33% |
| Glutamine GLN (Q) | 14 | 2.76% |
| Proline PRO (P) | 27 | 5.31% |
| Serine SER (S) | 43 | 8.46% |
| Arginine ARG (R) | 9 | 1.77% |
| Threonine THR (T) | 22 | 4.33% |
| Tryptophan TRP (W) | 3 | 0.59% |
| Valine VAL (V) | 42 | 8.27% |
| Tyrosine TYR (Y) | 13 | 2.56% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2549 |
| Hydrogen | H | 3919 |
| Nitrogen | N | 639 |
| Oxygen | O | 785 |
| Sulphur | S | 9 |
| Formula | C2549H3919N639O785S9 |
| Total Number of Atoms: | 7901 |
| Total number of positively charged residues (ARG + LYS): | 56 |
| Total number of negatively charged residues (ASP + GLU): | 81 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 36120 Absorption 0.1% (=1 g/l) 0.641, assuming all pairs of CYS residues form cystines Ext. coefficient 35870 Absorption 0.1% (=1 g/l) 0.636, assuming all CYS residues are reduced |
| Aromaticity: | 0.106 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.08 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.51, 23.03, 26.38] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 78.1299 |
| Grand average of hydropathicity (GRAVY): | -0.32 |