Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5057 |
| Number of amino acids: | 436 |
| Molecular Weight: | 48073.08 Da |
| Theoretical pI: | 6.23 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 31 | 7.11% |
| Cysteine CYS (C) | 2 | 0.46% |
| Glutamic Acid GLU (E) | 28 | 6.42% |
| Aspartic Acid ASP (D) | 24 | 5.5% |
| Glycine GLY (G) | 29 | 6.65% |
| Phynylalanine PHE (F) | 17 | 3.9% |
| Isoleucine ILE (I) | 23 | 5.28% |
| Histidine HIS (H) | 15 | 3.44% |
| Lysine LYS (K) | 25 | 5.73% |
| Methionine MET (M) | 10 | 2.29% |
| Leucine LEU (L) | 50 | 11.47% |
| Asparagine ASN (N) | 15 | 3.44% |
| Glutamine GLN (Q) | 15 | 3.44% |
| Proline PRO (P) | 38 | 8.72% |
| Serine SER (S) | 30 | 6.88% |
| Arginine ARG (R) | 21 | 4.82% |
| Threonine THR (T) | 24 | 5.5% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 27 | 6.19% |
| Tyrosine TYR (Y) | 12 | 2.75% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2154 |
| Hydrogen | H | 3418 |
| Nitrogen | N | 584 |
| Oxygen | O | 637 |
| Sulphur | S | 12 |
| Formula | C2154H3418N584O637S12 |
| Total Number of Atoms: | 6805 |
| Total number of positively charged residues (ARG + LYS): | 46 |
| Total number of negatively charged residues (ASP + GLU): | 52 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 18005 Absorption 0.1% (=1 g/l) 0.375, assuming all pairs of CYS residues form cystines Ext. coefficient 17880 Absorption 0.1% (=1 g/l) 0.372, assuming all CYS residues are reduced |
| Aromaticity: | 0.067 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 54.08 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [29.59, 25.69, 27.29] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 90.367 |
| Grand average of hydropathicity (GRAVY): | -0.28 |