Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5055 |
| Number of amino acids: | 497 |
| Molecular Weight: | 55832.56 Da |
| Theoretical pI: | 5.85 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 26 | 5.23% |
| Cysteine CYS (C) | 7 | 1.41% |
| Glutamic Acid GLU (E) | 30 | 6.04% |
| Aspartic Acid ASP (D) | 24 | 4.83% |
| Glycine GLY (G) | 40 | 8.05% |
| Phynylalanine PHE (F) | 30 | 6.04% |
| Isoleucine ILE (I) | 29 | 5.84% |
| Histidine HIS (H) | 13 | 2.62% |
| Lysine LYS (K) | 31 | 6.24% |
| Methionine MET (M) | 9 | 1.81% |
| Leucine LEU (L) | 44 | 8.85% |
| Asparagine ASN (N) | 27 | 5.43% |
| Glutamine GLN (Q) | 8 | 1.61% |
| Proline PRO (P) | 29 | 5.84% |
| Serine SER (S) | 42 | 8.45% |
| Arginine ARG (R) | 14 | 2.82% |
| Threonine THR (T) | 24 | 4.83% |
| Tryptophan TRP (W) | 12 | 2.41% |
| Valine VAL (V) | 34 | 6.84% |
| Tyrosine TYR (Y) | 24 | 4.83% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2559 |
| Hydrogen | H | 3851 |
| Nitrogen | N | 643 |
| Oxygen | O | 731 |
| Sulphur | S | 16 |
| Formula | C2559H3851N643O731S16 |
| Total Number of Atoms: | 7800 |
| Total number of positively charged residues (ARG + LYS): | 45 |
| Total number of negatively charged residues (ASP + GLU): | 54 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 102135 Absorption 0.1% (=1 g/l) 1.829, assuming all pairs of CYS residues form cystines Ext. coefficient 101760 Absorption 0.1% (=1 g/l) 1.823, assuming all CYS residues are reduced |
| Aromaticity: | 0.133 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.67 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [34.81, 27.77, 21.93] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 82.3541 |
| Grand average of hydropathicity (GRAVY): | -0.17 |