Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5050 |
| Number of amino acids: | 733 |
| Molecular Weight: | 82205.92 Da |
| Theoretical pI: | 5.11 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 25 | 3.41% |
| Cysteine CYS (C) | 28 | 3.82% |
| Glutamic Acid GLU (E) | 49 | 6.68% |
| Aspartic Acid ASP (D) | 40 | 5.46% |
| Glycine GLY (G) | 55 | 7.5% |
| Phynylalanine PHE (F) | 33 | 4.5% |
| Isoleucine ILE (I) | 44 | 6% |
| Histidine HIS (H) | 17 | 2.32% |
| Lysine LYS (K) | 28 | 3.82% |
| Methionine MET (M) | 17 | 2.32% |
| Leucine LEU (L) | 71 | 9.69% |
| Asparagine ASN (N) | 43 | 5.87% |
| Glutamine GLN (Q) | 37 | 5.05% |
| Proline PRO (P) | 27 | 3.68% |
| Serine SER (S) | 59 | 8.05% |
| Arginine ARG (R) | 34 | 4.64% |
| Threonine THR (T) | 52 | 7.09% |
| Tryptophan TRP (W) | 6 | 0.82% |
| Valine VAL (V) | 43 | 5.87% |
| Tyrosine TYR (Y) | 25 | 3.41% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 3603 |
| Hydrogen | H | 5627 |
| Nitrogen | N | 983 |
| Oxygen | O | 1128 |
| Sulphur | S | 45 |
| Formula | C3603H5627N983O1128S45 |
| Total Number of Atoms: | 11386 |
| Total number of positively charged residues (ARG + LYS): | 62 |
| Total number of negatively charged residues (ASP + GLU): | 89 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 72000 Absorption 0.1% (=1 g/l) 0.876, assuming all pairs of CYS residues form cystines Ext. coefficient 70250 Absorption 0.1% (=1 g/l) 0.855, assuming all CYS residues are reduced |
| Aromaticity: | 0.087 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 37.89 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.29, 25.10, 22.10] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.6098 |
| Grand average of hydropathicity (GRAVY): | -0.28 |