Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5047 |
| Number of amino acids: | 493 |
| Molecular Weight: | 54383.67 Da |
| Theoretical pI: | 4.96 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 34 | 6.9% |
| Cysteine CYS (C) | 8 | 1.62% |
| Glutamic Acid GLU (E) | 32 | 6.49% |
| Aspartic Acid ASP (D) | 32 | 6.49% |
| Glycine GLY (G) | 42 | 8.52% |
| Phynylalanine PHE (F) | 18 | 3.65% |
| Isoleucine ILE (I) | 20 | 4.06% |
| Histidine HIS (H) | 13 | 2.64% |
| Lysine LYS (K) | 26 | 5.27% |
| Methionine MET (M) | 10 | 2.03% |
| Leucine LEU (L) | 44 | 8.92% |
| Asparagine ASN (N) | 29 | 5.88% |
| Glutamine GLN (Q) | 15 | 3.04% |
| Proline PRO (P) | 28 | 5.68% |
| Serine SER (S) | 45 | 9.13% |
| Arginine ARG (R) | 15 | 3.04% |
| Threonine THR (T) | 22 | 4.46% |
| Tryptophan TRP (W) | 7 | 1.42% |
| Valine VAL (V) | 28 | 5.68% |
| Tyrosine TYR (Y) | 25 | 5.07% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2414 |
| Hydrogen | H | 3677 |
| Nitrogen | N | 641 |
| Oxygen | O | 758 |
| Sulphur | S | 18 |
| Formula | C2414H3677N641O758S18 |
| Total Number of Atoms: | 7508 |
| Total number of positively charged residues (ARG + LYS): | 41 |
| Total number of negatively charged residues (ASP + GLU): | 64 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 76250 Absorption 0.1% (=1 g/l) 1.402, assuming all pairs of CYS residues form cystines Ext. coefficient 75750 Absorption 0.1% (=1 g/l) 1.393, assuming all CYS residues are reduced |
| Aromaticity: | 0.101 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 45.09 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.80, 29.21, 24.34] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 73.996 |
| Grand average of hydropathicity (GRAVY): | -0.44 |