Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5041 |
| Number of amino acids: | 224 |
| Molecular Weight: | 23479.09 Da |
| Theoretical pI: | 6.09 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 20 | 8.93% |
| Cysteine CYS (C) | 2 | 0.89% |
| Glutamic Acid GLU (E) | 9 | 4.02% |
| Aspartic Acid ASP (D) | 10 | 4.46% |
| Glycine GLY (G) | 22 | 9.82% |
| Phynylalanine PHE (F) | 13 | 5.8% |
| Isoleucine ILE (I) | 6 | 2.68% |
| Histidine HIS (H) | 4 | 1.79% |
| Lysine LYS (K) | 11 | 4.91% |
| Methionine MET (M) | 6 | 2.68% |
| Leucine LEU (L) | 25 | 11.16% |
| Asparagine ASN (N) | 11 | 4.91% |
| Glutamine GLN (Q) | 3 | 1.34% |
| Proline PRO (P) | 18 | 8.04% |
| Serine SER (S) | 18 | 8.04% |
| Arginine ARG (R) | 6 | 2.68% |
| Threonine THR (T) | 13 | 5.8% |
| Tryptophan TRP (W) | 1 | 0.45% |
| Valine VAL (V) | 24 | 10.71% |
| Tyrosine TYR (Y) | 2 | 0.89% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1058 |
| Hydrogen | H | 1676 |
| Nitrogen | N | 276 |
| Oxygen | O | 310 |
| Sulphur | S | 8 |
| Formula | C1058H1676N276O310S8 |
| Total Number of Atoms: | 3328 |
| Total number of positively charged residues (ARG + LYS): | 17 |
| Total number of negatively charged residues (ASP + GLU): | 19 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 8605 Absorption 0.1% (=1 g/l) 0.366, assuming all pairs of CYS residues form cystines Ext. coefficient 8480 Absorption 0.1% (=1 g/l) 0.361, assuming all CYS residues are reduced |
| Aromaticity: | 0.071 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 16.23 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.70, 30.80, 26.79] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 93.9732 |
| Grand average of hydropathicity (GRAVY): | 0.22 |