Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5028 |
| Number of amino acids: | 364 |
| Molecular Weight: | 40492.11 Da |
| Theoretical pI: | 5.44 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 34 | 9.34% |
| Cysteine CYS (C) | 6 | 1.65% |
| Glutamic Acid GLU (E) | 37 | 10.16% |
| Aspartic Acid ASP (D) | 23 | 6.32% |
| Glycine GLY (G) | 23 | 6.32% |
| Phynylalanine PHE (F) | 19 | 5.22% |
| Isoleucine ILE (I) | 15 | 4.12% |
| Histidine HIS (H) | 6 | 1.65% |
| Lysine LYS (K) | 42 | 11.54% |
| Methionine MET (M) | 3 | 0.82% |
| Leucine LEU (L) | 29 | 7.97% |
| Asparagine ASN (N) | 11 | 3.02% |
| Glutamine GLN (Q) | 4 | 1.1% |
| Proline PRO (P) | 14 | 3.85% |
| Serine SER (S) | 25 | 6.87% |
| Arginine ARG (R) | 9 | 2.47% |
| Threonine THR (T) | 14 | 3.85% |
| Tryptophan TRP (W) | 4 | 1.1% |
| Valine VAL (V) | 32 | 8.79% |
| Tyrosine TYR (Y) | 14 | 3.85% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1830 |
| Hydrogen | H | 2854 |
| Nitrogen | N | 464 |
| Oxygen | O | 553 |
| Sulphur | S | 9 |
| Formula | C1830H2854N464O553S9 |
| Total Number of Atoms: | 5710 |
| Total number of positively charged residues (ARG + LYS): | 51 |
| Total number of negatively charged residues (ASP + GLU): | 60 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 43235 Absorption 0.1% (=1 g/l) 1.068, assuming all pairs of CYS residues form cystines Ext. coefficient 42860 Absorption 0.1% (=1 g/l) 1.058, assuming all CYS residues are reduced |
| Aromaticity: | 0.102 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 30.62 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.04, 20.05, 28.30] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.978 |
| Grand average of hydropathicity (GRAVY): | -0.34 |