Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5025 |
| Number of amino acids: | 321 |
| Molecular Weight: | 34536.62 Da |
| Theoretical pI: | 5.05 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 29 | 9.03% |
| Cysteine CYS (C) | 8 | 2.49% |
| Glutamic Acid GLU (E) | 13 | 4.05% |
| Aspartic Acid ASP (D) | 18 | 5.61% |
| Glycine GLY (G) | 25 | 7.79% |
| Phynylalanine PHE (F) | 25 | 7.79% |
| Isoleucine ILE (I) | 17 | 5.3% |
| Histidine HIS (H) | 3 | 0.93% |
| Lysine LYS (K) | 9 | 2.8% |
| Methionine MET (M) | 8 | 2.49% |
| Leucine LEU (L) | 31 | 9.66% |
| Asparagine ASN (N) | 16 | 4.98% |
| Glutamine GLN (Q) | 12 | 3.74% |
| Proline PRO (P) | 19 | 5.92% |
| Serine SER (S) | 24 | 7.48% |
| Arginine ARG (R) | 15 | 4.67% |
| Threonine THR (T) | 20 | 6.23% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 26 | 8.1% |
| Tyrosine TYR (Y) | 3 | 0.93% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1541 |
| Hydrogen | H | 2423 |
| Nitrogen | N | 409 |
| Oxygen | O | 459 |
| Sulphur | S | 16 |
| Formula | C1541H2423N409O459S16 |
| Total Number of Atoms: | 4848 |
| Total number of positively charged residues (ARG + LYS): | 24 |
| Total number of negatively charged residues (ASP + GLU): | 31 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 4970 Absorption 0.1% (=1 g/l) 0.144, assuming all pairs of CYS residues form cystines Ext. coefficient 4470 Absorption 0.1% (=1 g/l) 0.129, assuming all CYS residues are reduced |
| Aromaticity: | 0.087 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 36.06 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.78, 26.17, 25.23] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 90.8411 |
| Grand average of hydropathicity (GRAVY): | 0.20 |