Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5023 |
| Number of amino acids: | 305 |
| Molecular Weight: | 34145.47 Da |
| Theoretical pI: | 8.25 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 10 | 3.28% |
| Cysteine CYS (C) | 4 | 1.31% |
| Glutamic Acid GLU (E) | 9 | 2.95% |
| Aspartic Acid ASP (D) | 17 | 5.57% |
| Glycine GLY (G) | 27 | 8.85% |
| Phynylalanine PHE (F) | 16 | 5.25% |
| Isoleucine ILE (I) | 13 | 4.26% |
| Histidine HIS (H) | 4 | 1.31% |
| Lysine LYS (K) | 19 | 6.23% |
| Methionine MET (M) | 8 | 2.62% |
| Leucine LEU (L) | 25 | 8.2% |
| Asparagine ASN (N) | 22 | 7.21% |
| Glutamine GLN (Q) | 12 | 3.93% |
| Proline PRO (P) | 11 | 3.61% |
| Serine SER (S) | 35 | 11.48% |
| Arginine ARG (R) | 9 | 2.95% |
| Threonine THR (T) | 20 | 6.56% |
| Tryptophan TRP (W) | 10 | 3.28% |
| Valine VAL (V) | 21 | 6.89% |
| Tyrosine TYR (Y) | 13 | 4.26% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1533 |
| Hydrogen | H | 2325 |
| Nitrogen | N | 403 |
| Oxygen | O | 460 |
| Sulphur | S | 12 |
| Formula | C1533H2325N403O460S12 |
| Total Number of Atoms: | 4733 |
| Total number of positively charged residues (ARG + LYS): | 28 |
| Total number of negatively charged residues (ASP + GLU): | 26 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 74620 Absorption 0.1% (=1 g/l) 2.185, assuming all pairs of CYS residues form cystines Ext. coefficient 74370 Absorption 0.1% (=1 g/l) 2.178, assuming all CYS residues are reduced |
| Aromaticity: | 0.128 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 34.32 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.13, 31.15, 17.05] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 71.8361 |
| Grand average of hydropathicity (GRAVY): | -0.34 |