Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5017 |
| Number of amino acids: | 459 |
| Molecular Weight: | 52231.43 Da |
| Theoretical pI: | 5.39 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 22 | 4.79% |
| Cysteine CYS (C) | 1 | 0.22% |
| Glutamic Acid GLU (E) | 45 | 9.8% |
| Aspartic Acid ASP (D) | 24 | 5.23% |
| Glycine GLY (G) | 23 | 5.01% |
| Phynylalanine PHE (F) | 24 | 5.23% |
| Isoleucine ILE (I) | 26 | 5.66% |
| Histidine HIS (H) | 8 | 1.74% |
| Lysine LYS (K) | 31 | 6.75% |
| Methionine MET (M) | 4 | 0.87% |
| Leucine LEU (L) | 46 | 10.02% |
| Asparagine ASN (N) | 35 | 7.63% |
| Glutamine GLN (Q) | 34 | 7.41% |
| Proline PRO (P) | 19 | 4.14% |
| Serine SER (S) | 41 | 8.93% |
| Arginine ARG (R) | 26 | 5.66% |
| Threonine THR (T) | 14 | 3.05% |
| Tryptophan TRP (W) | 0 | 0% |
| Valine VAL (V) | 27 | 5.88% |
| Tyrosine TYR (Y) | 9 | 1.96% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2294 |
| Hydrogen | H | 3647 |
| Nitrogen | N | 653 |
| Oxygen | O | 731 |
| Sulphur | S | 5 |
| Formula | C2294H3647N653O731S5 |
| Total Number of Atoms: | 7330 |
| Total number of positively charged residues (ARG + LYS): | 57 |
| Total number of negatively charged residues (ASP + GLU): | 69 |
| Extinction Coefficient: | This protein does not contain any Tryptophan residues. Experience shows that this could result in more than 10% error in the computed extinction coefficient. Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 13410 Absorption 0.1% (=1 g/l) 0.257, assuming all pairs of CYS residues form cystines Ext. coefficient 13410 Absorption 0.1% (=1 g/l) 0.257, assuming all CYS residues are reduced |
| Aromaticity: | 0.072 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 50.09 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.76, 25.71, 25.49] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 83.0284 |
| Grand average of hydropathicity (GRAVY): | -0.69 |