Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5007 |
| Number of amino acids: | 404 |
| Molecular Weight: | 44297.91 Da |
| Theoretical pI: | 8.52 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 23 | 5.69% |
| Cysteine CYS (C) | 9 | 2.23% |
| Glutamic Acid GLU (E) | 10 | 2.48% |
| Aspartic Acid ASP (D) | 23 | 5.69% |
| Glycine GLY (G) | 40 | 9.9% |
| Phynylalanine PHE (F) | 14 | 3.47% |
| Isoleucine ILE (I) | 31 | 7.67% |
| Histidine HIS (H) | 19 | 4.7% |
| Lysine LYS (K) | 17 | 4.21% |
| Methionine MET (M) | 9 | 2.23% |
| Leucine LEU (L) | 28 | 6.93% |
| Asparagine ASN (N) | 27 | 6.68% |
| Glutamine GLN (Q) | 14 | 3.47% |
| Proline PRO (P) | 17 | 4.21% |
| Serine SER (S) | 42 | 10.4% |
| Arginine ARG (R) | 20 | 4.95% |
| Threonine THR (T) | 20 | 4.95% |
| Tryptophan TRP (W) | 8 | 1.98% |
| Valine VAL (V) | 22 | 5.45% |
| Tyrosine TYR (Y) | 11 | 2.72% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1945 |
| Hydrogen | H | 3020 |
| Nitrogen | N | 568 |
| Oxygen | O | 585 |
| Sulphur | S | 18 |
| Formula | C1945H3020N568O585S18 |
| Total Number of Atoms: | 6136 |
| Total number of positively charged residues (ARG + LYS): | 37 |
| Total number of negatively charged residues (ASP + GLU): | 33 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 60890 Absorption 0.1% (=1 g/l) 1.375, assuming all pairs of CYS residues form cystines Ext. coefficient 60390 Absorption 0.1% (=1 g/l) 1.363, assuming all CYS residues are reduced |
| Aromaticity: | 0.082 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.98 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.22, 31.19, 17.33] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 78.4406 |
| Grand average of hydropathicity (GRAVY): | -0.32 |