Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5004 |
| Number of amino acids: | 368 |
| Molecular Weight: | 40787.02 Da |
| Theoretical pI: | 5.79 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 34 | 9.24% |
| Cysteine CYS (C) | 3 | 0.82% |
| Glutamic Acid GLU (E) | 13 | 3.53% |
| Aspartic Acid ASP (D) | 31 | 8.42% |
| Glycine GLY (G) | 41 | 11.14% |
| Phynylalanine PHE (F) | 17 | 4.62% |
| Isoleucine ILE (I) | 19 | 5.16% |
| Histidine HIS (H) | 13 | 3.53% |
| Lysine LYS (K) | 20 | 5.43% |
| Methionine MET (M) | 7 | 1.9% |
| Leucine LEU (L) | 31 | 8.42% |
| Asparagine ASN (N) | 14 | 3.8% |
| Glutamine GLN (Q) | 11 | 2.99% |
| Proline PRO (P) | 17 | 4.62% |
| Serine SER (S) | 17 | 4.62% |
| Arginine ARG (R) | 15 | 4.08% |
| Threonine THR (T) | 17 | 4.62% |
| Tryptophan TRP (W) | 15 | 4.08% |
| Valine VAL (V) | 21 | 5.71% |
| Tyrosine TYR (Y) | 12 | 3.26% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1851 |
| Hydrogen | H | 2775 |
| Nitrogen | N | 499 |
| Oxygen | O | 528 |
| Sulphur | S | 10 |
| Formula | C1851H2775N499O528S10 |
| Total Number of Atoms: | 5663 |
| Total number of positively charged residues (ARG + LYS): | 35 |
| Total number of negatively charged residues (ASP + GLU): | 44 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 100505 Absorption 0.1% (=1 g/l) 2.464, assuming all pairs of CYS residues form cystines Ext. coefficient 100380 Absorption 0.1% (=1 g/l) 2.461, assuming all CYS residues are reduced |
| Aromaticity: | 0.120 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 20.06 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [31.25, 24.18, 23.10] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 78.7771 |
| Grand average of hydropathicity (GRAVY): | -0.29 |