Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_5001 |
| Number of amino acids: | 311 |
| Molecular Weight: | 34984.71 Da |
| Theoretical pI: | 6.67 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 25 | 8.04% |
| Cysteine CYS (C) | 4 | 1.29% |
| Glutamic Acid GLU (E) | 13 | 4.18% |
| Aspartic Acid ASP (D) | 23 | 7.4% |
| Glycine GLY (G) | 25 | 8.04% |
| Phynylalanine PHE (F) | 16 | 5.14% |
| Isoleucine ILE (I) | 20 | 6.43% |
| Histidine HIS (H) | 6 | 1.93% |
| Lysine LYS (K) | 18 | 5.79% |
| Methionine MET (M) | 8 | 2.57% |
| Leucine LEU (L) | 24 | 7.72% |
| Asparagine ASN (N) | 20 | 6.43% |
| Glutamine GLN (Q) | 9 | 2.89% |
| Proline PRO (P) | 11 | 3.54% |
| Serine SER (S) | 19 | 6.11% |
| Arginine ARG (R) | 17 | 5.47% |
| Threonine THR (T) | 13 | 4.18% |
| Tryptophan TRP (W) | 6 | 1.93% |
| Valine VAL (V) | 20 | 6.43% |
| Tyrosine TYR (Y) | 14 | 4.5% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1569 |
| Hydrogen | H | 2411 |
| Nitrogen | N | 427 |
| Oxygen | O | 459 |
| Sulphur | S | 12 |
| Formula | C1569H2411N427O459S12 |
| Total Number of Atoms: | 4878 |
| Total number of positively charged residues (ARG + LYS): | 35 |
| Total number of negatively charged residues (ASP + GLU): | 36 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 54110 Absorption 0.1% (=1 g/l) 1.547, assuming all pairs of CYS residues form cystines Ext. coefficient 53860 Absorption 0.1% (=1 g/l) 1.540, assuming all CYS residues are reduced |
| Aromaticity: | 0.116 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 38.91 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [32.15, 24.12, 22.51] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 81.865 |
| Grand average of hydropathicity (GRAVY): | -0.28 |