Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4980 |
| Number of amino acids: | 374 |
| Molecular Weight: | 41136.72 Da |
| Theoretical pI: | 5.17 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 35 | 9.36% |
| Cysteine CYS (C) | 2 | 0.53% |
| Glutamic Acid GLU (E) | 21 | 5.61% |
| Aspartic Acid ASP (D) | 21 | 5.61% |
| Glycine GLY (G) | 24 | 6.42% |
| Phynylalanine PHE (F) | 15 | 4.01% |
| Isoleucine ILE (I) | 20 | 5.35% |
| Histidine HIS (H) | 6 | 1.6% |
| Lysine LYS (K) | 22 | 5.88% |
| Methionine MET (M) | 11 | 2.94% |
| Leucine LEU (L) | 39 | 10.43% |
| Asparagine ASN (N) | 17 | 4.55% |
| Glutamine GLN (Q) | 15 | 4.01% |
| Proline PRO (P) | 16 | 4.28% |
| Serine SER (S) | 27 | 7.22% |
| Arginine ARG (R) | 10 | 2.67% |
| Threonine THR (T) | 33 | 8.82% |
| Tryptophan TRP (W) | 2 | 0.53% |
| Valine VAL (V) | 20 | 5.35% |
| Tyrosine TYR (Y) | 18 | 4.81% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1840 |
| Hydrogen | H | 2882 |
| Nitrogen | N | 472 |
| Oxygen | O | 569 |
| Sulphur | S | 13 |
| Formula | C1840H2882N472O569S13 |
| Total Number of Atoms: | 5776 |
| Total number of positively charged residues (ARG + LYS): | 32 |
| Total number of negatively charged residues (ASP + GLU): | 42 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 37945 Absorption 0.1% (=1 g/l) 0.922, assuming all pairs of CYS residues form cystines Ext. coefficient 37820 Absorption 0.1% (=1 g/l) 0.919, assuming all CYS residues are reduced |
| Aromaticity: | 0.094 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.22 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.48, 22.46, 28.34] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 86.3903 |
| Grand average of hydropathicity (GRAVY): | -0.16 |