Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4970 |
| Number of amino acids: | 515 |
| Molecular Weight: | 56533.06 Da |
| Theoretical pI: | 4.99 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 68 | 13.2% |
| Cysteine CYS (C) | 4 | 0.78% |
| Glutamic Acid GLU (E) | 46 | 8.93% |
| Aspartic Acid ASP (D) | 35 | 6.8% |
| Glycine GLY (G) | 28 | 5.44% |
| Phynylalanine PHE (F) | 30 | 5.83% |
| Isoleucine ILE (I) | 25 | 4.85% |
| Histidine HIS (H) | 11 | 2.14% |
| Lysine LYS (K) | 48 | 9.32% |
| Methionine MET (M) | 2 | 0.39% |
| Leucine LEU (L) | 42 | 8.16% |
| Asparagine ASN (N) | 17 | 3.3% |
| Glutamine GLN (Q) | 14 | 2.72% |
| Proline PRO (P) | 31 | 6.02% |
| Serine SER (S) | 26 | 5.05% |
| Arginine ARG (R) | 9 | 1.75% |
| Threonine THR (T) | 19 | 3.69% |
| Tryptophan TRP (W) | 4 | 0.78% |
| Valine VAL (V) | 38 | 7.38% |
| Tyrosine TYR (Y) | 18 | 3.5% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2575 |
| Hydrogen | H | 3967 |
| Nitrogen | N | 647 |
| Oxygen | O | 772 |
| Sulphur | S | 6 |
| Formula | C2575H3967N647O772S6 |
| Total Number of Atoms: | 7967 |
| Total number of positively charged residues (ARG + LYS): | 57 |
| Total number of negatively charged residues (ASP + GLU): | 81 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 49070 Absorption 0.1% (=1 g/l) 0.868, assuming all pairs of CYS residues form cystines Ext. coefficient 48820 Absorption 0.1% (=1 g/l) 0.864, assuming all CYS residues are reduced |
| Aromaticity: | 0.101 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 35.16 This indicates that the protein/peptide is stable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [30.49, 19.81, 30.68] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 85.3398 |
| Grand average of hydropathicity (GRAVY): | -0.24 |