Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4969 |
| Number of amino acids: | 404 |
| Molecular Weight: | 44628.6 Da |
| Theoretical pI: | 8.53 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 17 | 4.21% |
| Cysteine CYS (C) | 10 | 2.48% |
| Glutamic Acid GLU (E) | 13 | 3.22% |
| Aspartic Acid ASP (D) | 25 | 6.19% |
| Glycine GLY (G) | 35 | 8.66% |
| Phynylalanine PHE (F) | 20 | 4.95% |
| Isoleucine ILE (I) | 20 | 4.95% |
| Histidine HIS (H) | 12 | 2.97% |
| Lysine LYS (K) | 10 | 2.48% |
| Methionine MET (M) | 11 | 2.72% |
| Leucine LEU (L) | 42 | 10.4% |
| Asparagine ASN (N) | 24 | 5.94% |
| Glutamine GLN (Q) | 11 | 2.72% |
| Proline PRO (P) | 25 | 6.19% |
| Serine SER (S) | 43 | 10.64% |
| Arginine ARG (R) | 32 | 7.92% |
| Threonine THR (T) | 22 | 5.45% |
| Tryptophan TRP (W) | 3 | 0.74% |
| Valine VAL (V) | 21 | 5.2% |
| Tyrosine TYR (Y) | 8 | 1.98% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 1950 |
| Hydrogen | H | 3074 |
| Nitrogen | N | 572 |
| Oxygen | O | 589 |
| Sulphur | S | 21 |
| Formula | C1950H3074N572O589S21 |
| Total Number of Atoms: | 6206 |
| Total number of positively charged residues (ARG + LYS): | 42 |
| Total number of negatively charged residues (ASP + GLU): | 38 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 29045 Absorption 0.1% (=1 g/l) 0.651, assuming all pairs of CYS residues form cystines Ext. coefficient 28420 Absorption 0.1% (=1 g/l) 0.637, assuming all CYS residues are reduced |
| Aromaticity: | 0.077 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 49.42 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.22, 31.44, 20.54] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 79.1335 |
| Grand average of hydropathicity (GRAVY): | -0.31 |