Physicochemical Properties of Peptide
| PPepDB ID: | PPepDB_4957 |
| Number of amino acids: | 534 |
| Molecular Weight: | 58556.17 Da |
| Theoretical pI: | 5.27 |
| Amino acid | Amino acid count | Amino acid percentage |
| Alanine ALA (A) | 76 | 14.23% |
| Cysteine CYS (C) | 6 | 1.12% |
| Glutamic Acid GLU (E) | 32 | 5.99% |
| Aspartic Acid ASP (D) | 36 | 6.74% |
| Glycine GLY (G) | 45 | 8.43% |
| Phynylalanine PHE (F) | 17 | 3.18% |
| Isoleucine ILE (I) | 8 | 1.5% |
| Histidine HIS (H) | 20 | 3.75% |
| Lysine LYS (K) | 13 | 2.43% |
| Methionine MET (M) | 11 | 2.06% |
| Leucine LEU (L) | 47 | 8.8% |
| Asparagine ASN (N) | 15 | 2.81% |
| Glutamine GLN (Q) | 14 | 2.62% |
| Proline PRO (P) | 21 | 3.93% |
| Serine SER (S) | 39 | 7.3% |
| Arginine ARG (R) | 32 | 5.99% |
| Threonine THR (T) | 20 | 3.75% |
| Tryptophan TRP (W) | 11 | 2.06% |
| Valine VAL (V) | 39 | 7.3% |
| Tyrosine TYR (Y) | 32 | 5.99% |
| Element | Element's Abbreviation | Count |
| Carbon | C | 2604 |
| Hydrogen | H | 3921 |
| Nitrogen | N | 723 |
| Oxygen | O | 791 |
| Sulphur | S | 17 |
| Formula | C2604H3921N723O791S17 |
| Total Number of Atoms: | 8056 |
| Total number of positively charged residues (ARG + LYS): | 45 |
| Total number of negatively charged residues (ASP + GLU): | 68 |
| Extinction Coefficient: | Extinction coefficients are in units of M-1 cm-1, at 280 nm measured in water. Ext. coefficient 108555 Absorption 0.1% (=1 g/l) 1.854, assuming all pairs of CYS residues form cystines Ext. coefficient 108180 Absorption 0.1% (=1 g/l) 1.847, assuming all CYS residues are reduced |
| Aromaticity: | 0.112 Aromaticity is the calculated relative frequency of Phe+Trp+Tyr |
| Instability Index: | The computed Instability Index (II) is : 40.62 This indicates that the protein/peptide is unstable |
| Secondary Structure Fraction [Helix, Turn, Sheet]: | [28.84, 22.47, 31.09] Amino acids in helix: V, I, Y, F, W, L || Amino acids in turn: N, P, G, S || Amino acids in sheet: E, M, A, L |
| Aliphatic index: | 75.5805 |
| Grand average of hydropathicity (GRAVY): | -0.28 |